バイオイメージングまとめ / Bioimaging wiki

Microscopy / equipment

CLEM

IVM & X-ray CT & 3DEM - Matthia A. et al, Fast and precise targeting of single tumor cells in vivo by multimodal correlative microscopy, J Cell Sci, 2016

Micro/Nano X-ray CT (for Morphology)

EM & 3DEM

Microscopy

• A. KREMER et al., Journal of Microscopy, Vol. 259, Issue 2 2015

Neuroscience

• Narayanan Kasthuri et al, Saturated Reconstruction of a Volume of Neocortex, Cell, 201500824-7)

APEX2-Tag

• Proximity-dependent labeling methods for proteomic profiling in living cells

• Proximity labeling: spatially resolved proteomic mapping for neurobiology

• Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells

• Directed evolution of APEX2 for electron microscopy and proximity labeling

• APEX2- tagging of Sigma 1-receptor indicates subcellular protein topology with cytosolic N-terminus and ER luminal C-terminus

• APEX Fingerprinting Reveals the Subcellular Localization of Proteins of Interest

• APEX2-enhanced electron microscopy distinguishes sigma-1 receptor localization in the nucleoplasmic reticulum

Biology / Pathology

Segmentation for biology

• Jun Li et al, Dense Transformer Networks for Brain Electron Microscopy Image Segmentation, IJCAI-19

Segmentation for kidney

Dataset

• Gloria Buenoa et al, Data for glomeruli characterization in histopathological images, Data in Brief Volume 29, 2020.